The source code for all our projects is available on or
Our Ensembl plugin for ensembl.lepbase.org is available at bitbucket.org/lepbase/lepbase-ensembl
Our Ensembl mirror setup scripts are available at github.com/lepbase/ensembl-easy
Our Ensembl data import pipeline (which includes search indexing) is available at bitbucket.org/lepbase/lepbase-import
We have written a generic GFF parser, github.com/rjchallis/gff_parser, which we use in our import pipeline to accommodate, validate and correct the diversity of GFF formats used in Lepidopteran genome projects
Our SequenceServer fork with changes to allow hierarchical taxon display and closer integration with our Ensembl instance is available at bitbucket.org/lepbase/lepbase-sequenceserver
Our assembly statistic visualisations are based on our github.com/rjchallis/assembly_stats javascript project
We have written an API training environment, bitbucket.org/lepbase/lepbase-workshopfor use in training workshops, which we intend to make more widely applicable as an introduction to the Lepbase API
Our WordPress theme for this site is available at bitbucket.org/lepbase/lepbase-wordpress
Lepbase uses many other open source bioinformatics projects, including:
The EBI‘s Ensembl genome browser powers ensembl.lepbase.org
blast.lepbase.org is powered by the Wurm Lab‘s SequenceServer
Community annotations at webapollo.lepbase.org are made possible by Web Apollo